Lu Lab Publications

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2007 – Present

Zhang M, Deng J, Fang, C, Zhang X and Lu LJ (2010) Biomolecular Network Analysis and Applications. Knowledge-Based Bioinformatics. (in press)

Gordon S, Durairaj A, Lu LJ and Davidson WS (2010) HDL Proteomics: Identifying New Drug Targets and Biomarkers by Understanding Functionality. Current Cardiovascular Risk Report. 4:1-8 [PDF]

He F, Wen Y, Deng J, Lin X, Lu LJ, Jiao R and Ma J (2008) Probing Intrinsic Properties of a Robust Morphogen Gradient in Drosophila. Developmental Cell. 15(4):558-67 [PDF]

Huang YJ, Hang D, Lu LJ, Gerstein MB, Montelione GT (2008) Targeting the Human Cancer Pathway Protein Interaction Network by Structural Genomics. Molecular & Cellular Proteomics. 7(10):2048-60 [PDF]

Lu LJ, Sboner A, Huang YJ, Lu HX et al. (2007) Comparing Classical Pathways and Modern Networks: Towards the Development of an Edge Ontology. Trends in Biochemical Science. 32(7): 320-331 [PDF]

Wu L, Hwang S†, Rezaul K†, Lu LJ†, Mayya V, Gerstein M, Eng JK, Lundgren DH and Han DK (2007) Global Survey of Human T Leukemic Cells by Integrating Proteomic and Transcriptomic Profiling. Molecular & Cellular Proteomics. 6(8): 1343-53 [PDF]

† Contribute Equally

Flores SC, Lu LJ, Yang J, Carriero N and Gerstein MB (2007) Hinge Atlas: Relating Protein Sequence to Sites of Structural Flexibility. BMC Bioinformatics. 8:167 [PDF]

2003 – 2007

Kim PM, Lu LJ, Xia Y and Gerstein M. (2006) Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights. Science. 314(5807): 1938-41 [PDF][Perspective][Faculty of 1000]

Xia Y, Lu LJ and Gerstein M. (2006) Integrated Prediction of Membrane Helical Protein Interactions in Yeast. Journal of Molecular Biology. 357(1): 339-349 [PDF]

Flores S, Echols N, Milburn D, Hespenheide B, Keating K, Lu J, Wells S, Yu E, Thorpe M, and Gerstein M. (2006) The Database of Macromolecular Motions: New Features Added at the Decade Mark. Nucleic Acids Research. 34:D296-301. [PDF]

Lu LJ, Xia Y, Paccanaro A, Yu H and Gerstein M. (2005) Assessing the Limits of Genomic Integration for Predicting Protein-Protein Interactions. Genome Research. 15: 945-53. [PDF] [Faculty of 1000]

Lu LJ, Xia Y, Yu H, Rives A, Lu H, Schubert F and Gerstein M. (2005) Protein Interaction Prediction by Integrating Genomic Features and Protein Interaction Network Analysis. Data Analysis and Visualization in Genomics and Proteomics. 5: 61-81. [PDF]

Before 2003

Lu L, Arakaki AK, Lu H and Skolnick J. (2003) Multimeric Threading-Based Prediction of Protein-Protein Interactions on a Genomic Scale: Application to the Saccharomyces cerevisiae. Genome Research. 13:1146-1154 [PDF] [Press] [Faculty of 1000]

Lu H, Lu L and Skolnick J. (2003) Development of Unified Statistical Potentials Describing Protein-Protein Interactions. Biophysical Journal. 84 (3): 1895-901 [PDF]

Lu L, Lu H and Skolnick J. (2002) MULTIPROSPECTOR: An Algorithm for the Prediction of Protein-Protein Interactions by Multimeric Threading. Proteins: Structure, Functions, Genetics. 49:350-364 [PDF] [Cover] [Press] [Faculty of 1000]

* The average number of times being cited for all peer-reviewed papers that have been published for at least 6 months is 27.6 as of July, 2007.

* Four have been selected among top 10 papers by Faculty of 1000 in the sub-fields of bioinformatics or structural biology.

* The names of my students are underscored.